安装爆轰案例:
1.openfoam7(成功) 验证:of7 、 blockMesh
2.blastfoam2.0.0成功 验证:of、 blastfoam
安装上面则运行Fluid案例成功
3.mpi 成功 验证:mpirun -np 2 hostname
4.openfoam-adapterv1.2.3 位置/home/jie/myapp/openfoam-adapter-v1.2.3-of7,看有log,应该是安装成功,但没有验证
5.准备安装precice2.1.1
(base) jie@dell:~/myapp$ whereis precice
precice: /usr/include/precice /usr/share/precice
说明安装过了,但不知道对不对,然后再运行: dpkg -l | grep precice
输出:ii libprecice2 2.1.1 amd64 Precise Code Interaction Coupling Environment
说明已经安装了precice2.1.1版本
6. dealii9.2.0
发现~/.bashrc已经有了,说明已安装
export PATH=$PATH:/home/jie/myapp/dealii-9.2.0
验证成功:
(base) jie@dell:~/myapp/dealii-9.2.0/examples/step-1$ cmake .
(base) jie@dell:~/myapp/dealii-9.2.0/examples/step-1$ make run
输出[100%] Built target run
7.安装dealii-adapter (目前没安装运行elasticity成功)
注意:进行这一步的前提是你已经装好了precice!否则运行elasticity报错。
这里用preccie中的案例perpendicular-flap来验证:
cd ~/myapp/precice_tutorials/perpendicular-flap/solid-dealii
cp /home/jie/myapp/dealii-adapter/linear_elasticity/linear_elasticity .
mv linear_elasticity elasticity
./run.sh
然后报错(已解决):./elasticity: error while loading shared libraries: libboost_filesystem.so.1.71.0: cannot open shared object file: No such file or directory
注意:precice依赖包括boost,petsc,mpi,python,见连接:https://precice.org/installation-source-dependencies
然后通过dpkg -l | grep "boost*"命令找到了boost1.74版本的相关文件,但是也没有so文件。下面这几个库只要是运行固体elasticity这个可执行文件都要用到的
precice官方对boost、petsc、python的so库的依赖
在https://precice.org/installation-source-dependencies这个连接中,明确指出boost1.74.0不兼容precice2.1.1.所以编译dealii-adater后运行linear-elasticity报错。(因为把boost1.74.0文件名改为1.71.0不兼容)
precice2.1.1不支持Ubuntu 22.04 (jammy):,支持20.04focal
所以这里只能用官网中国提供的precice2.1.1_focal版本,这个最接近jammy版本(目前不确定能不能用)
precice的依赖和调试
precice也分为调试版本,下面是precice的依赖,是源代码安装的第二步的链接
https://precice.org/installation-source-dependencies
Dependencies
Overview
Required dependencies
Required optional dependencies
C++ compiler
CMake
Download CMake binaries
Eigen
Download the Eigen headers
Boost
Build boost from source
libxml2
Install libxml2 from source
PETSc
Build PETSc from source
Python
MPI
Ginkgo
源代码手动安装boost1.71.0
然后我的ubuntu22.04系统通过apt install只能安装boost1.74.0,通过源代码手动安装boost1.71.0报错
https://sourceforge.net/projects/boost/
tar -zxvf 压缩包sudo ./bootstrap.sh --with-libraries=all./b2 ./b2 install
然后报错
...failed gcc.compile.c++ bin.v2/libs/log/build/gcc-11/release/threadapi-pthread/threading-multi/visibility-hidden/setup/init_from_settings.o...
...skipped <pbin.v2/libs/log/build/gcc-11/release/threadapi-pthread/threading-multi/visibility-hidden>libboost_log_setup.so.1.71.0 for lack of <pbin.v2/libs/log/build/gcc-11/release/threadapi-pthread/threading-multi/visibility-hidden>setup/init_from_settings.o...
...skipped <p/usr/local/lib>libboost_log_setup.so.1.71.0 for lack of <pbin.v2/libs/log/build/gcc-11/release/threadapi-pthread/threading-multi/visibility-hidden>libboost_log_setup.so.1.71.0...
...skipped <p/usr/local/lib>libboost_log_setup.so for lack of <p/usr/local/lib>libboost_log_setup.so.1.71.0...
...skipped <p/usr/local/lib>libboost_log_setup.so.1 for lack of <p/usr/local/lib>libboost_log_setup.so.1.71.0...
...skipped <p/usr/local/lib>libboost_log_setup.so.1.71 for lack of <p/usr/local/lib>libboost_log_setup.so.1.71.0...
...skipped <p/usr/local/lib/cmake/boost_log_setup-1.71.0>libboost_log_setup-variant-shared.cmake for lack of <pbin.v2/libs/log/build/gcc-11/release/threadapi-pthread/threading-multi/visibility-hidden>libboost_log_setup.so.1.71.0...
...failed updating 30 targets...
...skipped 82 targets...
总结:
目前确定是ubuntu22.04与precice2.1.1不兼容(体现在precice的依赖项boost:只能安装不兼容precice2.1.1的boost1.74.0,但是不能安装兼容precice2.1.1的boost1.71.0)
剩下可行的解决方法:
1.再装一个20.04系统重新安装
2.看看能不能别的方法安装boost1.71.0,是不是自己没找到更好的方法。
3.看能不能用precice2.x版本(注意与precice3.x不兼容)且支持ubuntu22.04jammy版本的(比如2.4.0和2.5.0就支持ubuntu22.04)
4.源代码安装precice试一试(中间会安装boost、petsc、python的so库)